poniedziałek, 3 czerwca 2019

Ecophysiology of learning - Dwa stypendia doktoranckie



I seek 2 motivated Ph.D. students to join the project: ”Ecophysiology of learning: The effects of short- and long-term changes in ambient temperature on learning performance in a model songbird”, funded by the Polish National Science Centre (NCN) OPUS grant.

Project: Given current increase in climate unpredictability and short-term variability, it is particularly important to understand the consequences of environmental variation for cognitive performance. On the one hand, highly variable environmental conditions could induce physiological costs that may set limits to cognitive functions. On the other hand, environmental fluctuations could promote cognitive mechanisms responsible for more versatile behaviors. Those two options could be reconciled if physiological costs are reduced by pre-natal programming and/or developmental plasticity. Yet so far, the research in the field of environmental dependency of learning performance and potential for its modulation at early life stages is scarce. The main aim of the current project is to study the effect of temperature fluctuations in different time scales on learning efficiency in a model songbird, the zebra finch. Specifically, we will verify the following hypotheses: (i) Highly variable ambient temperature during development affects efficiency of the learning processes. (ii) Maternal effects modify the consequences of variable ambient temperature experienced during development on the efficiency of learning processes. (iii) Mismatch between environmental variability experienced during development and during adulthood affects learning processes at adulthood. 

Description of work: The research team will consist of PI (Joanna Rutkowska: http://iron2.eko.uj.edu.pl/rutkowska/index_e.htm), technical assistant and two PhD students. The study will be carried out at the Institute of Environmental Sciences of the Jagiellonian University in Kraków, on a captive population of zebra finches established in 2000. It will involve breeding the birds, cross-fostering eggs, performing basic morphological measurements, and physiological tests such as analyses of blood parameters and hormone levels. Both PhD students will be trained to perform the practical part of the project, guided in skills needed for a successful scientific career, and encouraged to develop his/her own ideas. 

Position 1) The PhD student will record and analyse singing performance of fathers/tutors and all of their male offspring. To assess learning accuracy, the student will then assess repertoire size and extract repetitions of each syllable. Dr. Carlos A. Botero (https://biology.wustl.edu/people/carlos-botero) is a collaborator on this project and he will provide training of song analyses. 

Position 2) The PhD student will carry out tests on learning performance in relation to food acquisition in juveniles and adults: (i) problem-solving tasks providing an integrative measure of perception, reasoning and decision making; and in adults only: (ii) learning associations, (iii) spatial learning and (iv) social learning. 

References:
Botero, C.A. et al.  2015. Evolutionary tipping points in the capacity to adapt to environmental change. Proceedings of the National Academy of Sciences 112:184-189. 
Maille, A. and Schradin, C. 2017. Ecophysiology of cognition: How do environmentally induced changes in physiology affect cognitive performance? Biological Reviews 92:1101-1112. 
Monaghan, P. 2008. Early growth conditions, phenotypic development and environmental change. Philosophical Transactions of the Royal Society B: 363:1635-1645.

Requirements: MSc in Biology or Animal Psychology and fluency in English. Experience in analyses of sonograms or any behavioural procedures planned in the current project, and previous research experience will be an additional asset.

Financing: The project is financed by the National Science Centre, which ensures a PhD student with a monthly tax-free research stipend of 4500 PLN for three years and a possibility of a short foreign internship. This stipend may be combined with the standard Ph.D. program scholarship if the student is accepted to the doctoral school in one of the following programs:

Application: The candidates are asked to e-mail Dr. Joanna Rutkowska (joanna.rutkowska_@_uj.edu.pl) attaching PDF files with 1) a cover letter explaining their background and interest in the project; 2) a CV. Contact details of two academics who can provide a confidential reference, should be in the body of the email. The review of applications is ongoing; please apply by 11th June 2019 to ensure full consideration in the June recruitment to the Doctoral School. The selected candidate or candidates will be assisted with a formal application to the Doctoral School. If the positions are not filled, there will be a possibility of an Autumn recruitment.

Starting date:
1st October  2019: for candidates who successfully recruit to the Doctoral School
1st January 2020: for candidates who do not wish to join the Doctoral School.

sobota, 18 maja 2019

Poradnik demaskatora - książka w PDF


Zostałem poproszony o zamieszczenie tu namiarów na książkę "Praktyczny Poradnik Demaskatora" której autorem jest Brian Martin. Całość (po polsku) do pobrania tu: https://www.bmartin.cc/pubs/19wb-Polish.pdf Książka jest też do kupienia w wersji papierowej: http://www.lulu.com/shop/brian-martin/whistleblowing-polish/paperback/product-23951641.html

Sam autor jest emerytowanym profesorem i niezłym naukowcem, tu jego dorobek:

Książki nie miałem okazji (jeszcze) przeczytać, ale z szybkiej oceny tematyki, jakiej dotyczy, i pobieżnego przejrzenia kilku rozdziałów, wydaje się, że może być przydatna w naszym środowisku. Plagiaty, ustawione konkursy, przekręty przy przyznawaniu i rozliczaniu grantów, nadużycia pozycji i władzy, i wiele innych form nieuczciwości w środowisku akademickim niestety zdarzają się i to całkiem często. Dla polepszenia jakości nauki w Polsce konieczne jest zgłaszanie i walczenie z tymi nieuczciwościami, ale na ogół nie wiemy jak sobie z nimi radzić, kiedy i jak działać, by być skutecznym ale i bezpiecznym, kiedy działań zaniechać, itp. - to wszystko ważne pytania, na które brakuje dobrych przepisów. Być może ten tekst okaże się pomocny, bo wydaje się mieć dwie użyteczne cechy: jest oparty na praktyce i doświadczeniu autora oraz przywoływanych w tekście konkretnych osób i spraw. Po drugie, autor wali prosto z mostu: co i jak robić, a czego unikać. 

Tu fragment, dla zachęty - opis jednej z metod działania, jaką jest przeciek:
Michał Żmihorski



wtorek, 14 maja 2019

Zmiana ustawy o PAN

Krąży w sieci projekt ustawy o zmianie ustawy o PAN. Nie czytałem, ale znajomi informują, że nie wszystkie proponowane zmiany dają powód do optymizmu. Ktoś czytał, mamy jakieś uwagi czy wnioski z tego tekstu?
Gdyby ktoś się już zapoznał z projektem prosimy o podzielenie się wrażeniami.

A tu fragment wywiadu (całość dostępna dla prenumeratorów) jakiego prezes Duszyński udzielił Gazecie Prawnej:
https://serwisy.gazetaprawna.pl/praca-i-kariera/artykuly/1409440,prof-jerzy-duszynski-nowelizacja-ustawy-o-pan.html

Michał Żmihorski

środa, 8 maja 2019

PhD position, Institute of Oceanology Polish Academy of Sciences


INSTITUTION: Institute of Oceanology Polish Academy of Sciences, Sopot, Poland

POSITION: scholarship position, PhD student type

REQUIREMENTS:
·        Master's level of studies in discipline related to the project’s scope (e.g., bioinformatics)
·        Experience and interest in ecology/biology (and/or earth sciences)
·     Good skills in statistics including multidimensional analyses (e.g., PCA, ANOSIM, RDA, t-sne, ANOVA, Hierarchical Clustering, etc.)
·    Experience in programming languages (e.g., R, Matlab, Python etc.) and in modeling (preferably shortly illustrated in portfolio)
·       Very good level of written and oral English language
·       Experience in publishing scientific results
·      Good communication skills, high motivation for work in interdisciplinary team/scope, passion for science, creativity

In addition to the above formal requirements, the candidate is expected to represent:
- education in the broad range of biological and ecological sciences and sincere interest in the use of numerical methods for a better understanding of the processes that shape marine ecosystems;
- high degree of motivation, communicativeness, creativity, reliability, diligence, punctuality, the ability to work both independently and in a team, and the ability to critically evaluate the obtained results;
- involvement in the field work in difficult conditions (e.g., seasickness, limited space on the research ship) and non-standard working hours (e.g., night shifts during cruises, travelling to and/or participating conferences during the weekend) and no health contraindications to work at sea;
- active participation in conferences, festivals and other forms of dissemination of project’s results and preparation of scientific publications in English at a high, international level.

Moreover, after the acceptance of the candidate she/he must meet the conditions of the regulations for granting research scholarships in research projects financed by the NCN funds, in particular:

PROJECT/JOB DESCRIPTION:
Project title: Changes in the structure and functioning of pelagic ecosystems affected by water darkening due to glacier/river runoff in the fjords of European Arctic (CoastDark)

Project description: The objective of the project is to analyse the influence of water darkening, due to the intensified glacier/river runoff, on the functioning of the marine pelagic food webs in the Arctic coastal waters. The aim is to quantify how the share of living plankton organisms in relation to mineral and organic particles will change along the gradient from the glacier/river discharge towards the open waters in the fjords of the western Spitsbergen. The project sampling will be carried out during two summer campaigns (July, 2019 & 2020) from the R/V “Oceania” in different fjords of the west Spitsbergen (e.g., Hornsund, Adventfjord, Kongsfjord). The investigation will be performed by the application of both modern optical methods and traditional oceanographic approaches. The water content at particular stations and depth water layers will be attributed to several traits: size, type (mineral vs organic, living vs dead) and composition. The final project result will be a model that will simulate the composition of various seawater components under different environmental scenarios.

Job description: Active participation in lab work, data collection (cruises) and preliminary analysis. Leading role in the design of a numerical model dealing with the content of “glacial soup” (plankton vs. suspended matter) in the Arctic coastal waters concerning various environmental  scenarios. Implementation, testing and validation of the model and numerical calculations. Active participation in summary, presentation and publication of project results.

FOUNDING SOURCE: NCN, OPUS-NZ
EMPLOYMENT CONDITIONS:
Scholarship in the amount of PLN 4 500 PLN per month, paid for 36 months. The scholarship can start between July and October 2019.
During being a beneficiary of the NCN scholarship at the maximum level, which is planned within this project, the candidate cannot receive any other remuneration from the NCN's funds (under a contract of employment and/or civil law contracts).
Applications should be submitted by 14th June 2019, 4:00 p.m., via e-mail to the following addresses: kasiab@iopan.pl (project’s co-ordinator) and/or dob@iopan.pl with a title: "PhD student – CoastDark".
We will contact selected candidates by email by 17th July 2019.

REQUIRED DOCUMENTS:
1) Cover letter
2) Curriculum vitae with a list of achievements (including the list of publications and description of skills useful in the project, in which the candidate has experience)
3) Master's degree diploma (a copy will be needed in August/September 2019 in order to meet NCN requirements for PhD studies)
4) Short and concise 'portoflio' illustrating the previous research experience (part of conference/seminar/poster presentation)
5) At least one recommendation letter and/or opinion on the candidate from the previous supervisor (of MSc thesis) or former directors with whom the applicant has previously cooperated with the contact details
6) Information clause on the processing of personal data (http://www.iopan.gda.pl/praca/INFORMATION_ON_THE_PROCESSING_OF_PERSONAL_DATA.pdf) together with the signed consent (signed scan) - http://www.iopan.gda.pl/praca/CONSENT_CLAUSE.pdf

All required documents should be saved in one PDF file.

The detailed conditions of employment are defined in the "Regulations for granting scholarships in research projects financed from the resources of the National Science Centre determined by the decision of the NCN Council no. 96/2016 of October 27, 2016."

The competition will be settled by 15th July 2019. The candidate who receives the highest number of points on the ranking list will be employed. Employment may be offered to the next person on the ranking list in a situation when the laureate of the competition resigns from signing the scholarship agreement.

poniedziałek, 22 kwietnia 2019

Postdoc, Lab Manager and Ph.D. Student positions - Insect Microbiomes


The forming Symbiosis Evolution research group at the Institute of Environmental Sciences at Jagiellonian University (www.symbioses.pl) has several open positions. The appointed researchers will implement and apply high-throughput next-generation sequencing and bioinformatics to the study of the ecological and evolutionary dynamics of the microbial symbioses of insects. The research is funded by NAWA Polish Returns grant "Insect Microbiomics" and NCN Sonata Bis grant "The evolutionary dynamics of the symbioses of Auchenorrhyncha".

POSTDOCTORAL RESEARCHER - INSECT MICROBIOMES
A NAWA-funded Postdoctoral Researcher position focused on the diversity and dynamics of insect microbiomes is available from 1 July 2019 for 48 months. The Postdoc will initially focus on the development of molecular methods and bioinformatic protocols for a high-throughput survey of insect microbiomes. Later, they will lead the characterization of microbiomes in extensive collections of insects and work on the analysis of the resulting data.
*** Details at https://symbioses.pl/wp-content/uploads/2019/04/Postdoc_UJ_Insect_Microbiomes.pdf
*** The review of applications starts in early May.

LAB MANAGER / RESEARCH TECHNICIAN
A NAWA-funded Laboratory Manager position is available from 1st July 2019 for 48 months. The appointed person will provide logistics and administrative support to the growing team, ensure the efficient function of the laboratory, and participate in research (sample management and processing).
*** Details (in Polish) at https://symbioses.pl/wp-content/uploads/2019/
04/LabTech_UJ_Insect_Microbiomes.pdf
*** The review of applications starts on 24th April.

PH.D. STUDENT - EVOLUTION OF INSECT SYMBIOSES
An NCN-funded Ph.D. Student position starts on 1st October 2019. The Student will focus on the bioinformatic reconstruction of co-diversification and replacement of heritable nutritional endosymbiotic bacteria and fungi across the diversity of the hemipteran suborder Auchenorrhyncha, and phylogenomic analyses of the host and symbiont relationships.
*** Details at https://symbioses.pl/wp-content/uploads/2019/04/PhD_UJ_Insect_Symbioses.pdf
*** The review of applications starts on 12th May 2019.

POSTDOCTORAL RESEARCHER IN BIOINFORMATICS - SWEDEN
Also, we are looking for a Postdoc (24 months), who will be based at the Swedish Museum of Natural History in Stockholm, Sweden, but work closely with our group at Jagiellonian University. As a part of an international team conducting one of the most extensive insect biodiversity surveys to date, the Postdoc will develop bioinformatic pipelines for the high-throughput analysis of insect community metabarcoding data and apply them to a massive collection of bulk insect samples from across Sweden and Madagascar.
*** Details at https://symbioses.pl/wp-content/uploads/2019/04/Postdoc_NRM-IBA_Bioinformatics.pdf
*** Application deadline - 12th May.

Questions? Please e-mail Dr. Piotr Łukasik - p.lukasik@gmail.com